If you use this service, could you please send us a mail to npsang@ibcp.fr with details about your usage of the NPSA service (tools used, frequency, type of sequence, ..) ?
Could you explain what makes this service unique for you ?
Could you please add information about your country and your laboratory ?
Thanks
What is NPS@ ?
Software facilities to analyse NPS@ 's data:
AnTheProt and MPSA .
Work with your own database
Geno3D : Automatic modeling of proteins 3D structure
Sequence homology search against proteic databases :
Sequence homology search against nucleic databases :
BLAST search (protein (tblastn) or nucleic (blastn, tblastx) query sequence)
Patterns and signatures search :
PATTINPROT : scan a protein sequence or a protein database for one or several pattern(s)
PROSCAN : scan a sequence for sites/signatures against PROSITE database
Profile building :
HMMBUILD : build a profile with HMMER (HMMER profile format)
Multiple alignment:
Clustal W Protein sequences (Des Higgins, EBI, Hinxton Hall, UK)
Clustal W DNA sequences (Des Higgins, EBI, Hinxton Hall, UK)
Multalin Protein sequences (F.Corpet, INRA Toulouse, France)
Multalin DNA sequences (F.Corpet, INRA Toulouse, France)
Secondary structure prediction :
Methods:
SOPM (Geourjon and Deléage, 1994)
SOPMA (Geourjon and Deléage, 1995)
HNN (Guermeur, 1997)
MLRC (Guermeur et al. , 1999)
DPM (Deléage and Roux, 1987)
DSC (King and Sternberg, 1996)
GOR I (Garnier et al. , 1978)
GOR III (Gibrat et al. , 1987)
GOR IV (Garnier et al. , 1996)
PHD (Rost and Sander, 1993)
PREDATOR (Frishman and Argos, 1996)
SIMPA96 (Levin, 1997)
Secondary structure consensus prediction
Miscellaneous analysis tools :
Acknowledgements
User : public Last modification time : Thu Jun 6 12:49:21 2024. Current time : Sat Jul 27 05:17:25 2024
Software facilities to analyse NPS@'s data:
AnTheProt and MPSA.
