If you use this service, could you please send us a mail to npsang@ibcp.fr with details about your usage of the NPSA service (tools used, frequency, type of sequence, ..) ? Could you explain what makes this service unique for you ? Could you please add information about your country and your laboratory ? Thanks

Work with a sequence

When in a NPS@ output you see the NPSA link, it allows you to work with a sequence and apply NPS@ methods on it.

What can you do then ?
You can :

View it it in MPSA/ ANTHEPROT
Do a homology search. The sequence will be the query one.
Scan the sequence against PROSITE database.
Search the sequence for one or several pattern (PATTINPROT ).
Make a consensus secondary prediction (12 secondary structure prediction methods available).
Do primary analysis (amphipaseek, physico-chemical profiles, coiled coils prediction, helix-turn-helix detection, amino-acid composition and sequence coloring).

NPS@ three-dimensional links
When the sequence comes from a 3D database, more links are available :

A link on PDB file summary at IGH (France), RCSB (USA) or EBI (UK).
Secondary structure can be deduced from 3D by DSSP or P-SEA programs.
Full PDB file can be retrieve (at NPS@).
You can view the structure in RASMOL or ANTHEPROT.
The MIME type to use is chemical/x-pdb for RASMOL and chemical/x-antheprot for ANTHEPROT.
A link on 3DEE database.
A link on CATH database.
A link on FSSP database.
A link on SCOP database.
A link on MOLMOV database.

User : public Last modification time : Mon Mar 15 15:24:37 2021. Current time : Sat Jul 27 08:54:02 2024