GOR1 help

A brief introduction to GOR1
GOR1 (GARNIER OSGUTHORPE and ROBSON) is a secondary structure prediction method based on the information theory. Scores for 4 conformational states are computed on a sliding window of 17 residues. These scores are corrected by decision constants and the highest one gives the conformational state for the residue in the center of the window (9th position).

Availability in NPS@
This method is available :

You can set the decision constants. You can choose the auto-calculated option or you can type your own decision constants (The default ones are the optimized ones).

NPS@ GOR1 output example
You can see:


User : public Last modification time : Mon Mar 15 15:24:37 2021. Current time : Tue Jun 18 16:45:38 2024