What is NPS@ ?

Methods available in NPS@

• AmphipaSeek prediction primary analysis
• Amino-acids composition primary analysis
• BLAST similarity search
• CLUSTALW multiple alignment
• Coiled-coil prediction primary analysis
• DPM secondary structure prediction
• DSC secondary structure prediction
• FASTA similarity search
• GORI secondary structure prediction
• GORIII secondary structure prediction
• GORIV secondary structure prediction
• Helix-turn-helix DNA-binding motifs prediction primary analysis
• HMMBUILD profile building
• HMMSEARCH similariry search
• HNN secondary structure prediction
• MLRC secondary structure prediction
• MULTALIN multiple alignment
• PATTINPROT pattern search
• PFMAKE profile building
• PFSEARCH similariry search
• PHD secondary structure prediction
• Physico-chemical profiles primary analysis
• PREDATOR secondary structure prediction
• PROSCAN pattern search (PROSITE scan)
• PSI-BLAST similarity search
• Secondary structure consensus prediction
• Sequence coloring primary analysis
• SIMPA96 secondary structure prediction
• SOPM secondary structure prediction
• SOPMA secondary structure prediction
• SSEARCH similarity search
• Fit PDB molecules fit molecules after alignment

Help on NPS@ input

• Help on sequence
• Help on database
• Help on pattern syntax

Help on NPS@ special features

• Analyzing data from an ACNUC query
• Uploading your own database
• Viewing NPS@ data with MPSA/ANTHEPROT
• Working on a sequence
• Working on a database