FASTA NUCLEIC search

[Abstract] [NPS@ help] [Original server]

Database :

Sequence name (optional) :
Paste a nucleic sequence below : help

FASTA parameters:
Number of best scores to display (-b, int) :
Number of alignments to show (-d, int) :
Expectation value upper limit (-E, real) :
Expectation value lower limit (-F, real) :
Turn off histogram display (-H) :
Reverse complement of query (-i) :
Translate only three forward frames/search only the forward strands (-3) :
Report long sequence description in alignments (-L) :
ktup :
Threshold for band optimization (-c) :
Penalty for the first residue in a gap (-f, real) :
Penalty for adfditional residues in a gap (-g, real) :
Width for band optimization (-y, int) : (16 for DNA and protein ktup=2, 32 for protein ktup=1)
-D, -m, -N, -q/-Q, -r, -S, -T, -w, -x, -z, -Z, and -1 options are not supported.